Running C3G GenPipes on Compute Canada HPC 🖥️

GenPipes is a flexible Python-based framework that facilitates the development and deployment of multi-step genomic workflows, optimized for High-Performance Computing (HPC) clusters and the cloud. It offers more than 13 open source, validated and scalable pipelines for various genomics applications. In this video we will show how to run GenPipes on Compute Canada (https://www.computecanada.ca/) Clusters.


Links and useful Resources
GenPipes Documentation: https://genpipes.readthedocs.io/en/latest/
Application for CCDB account: https://ccdb.computecanada.ca/account_application
Download Cygwin: https://www.cygwin.com/
Download Putty: https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html
Readset file format: https://genpipes.readthedocs.io/en/latest/get-started/concepts/readset_file.html#docs-readset-file
Design File format: https://genpipes.readthedocs.io/en/latest/get-started/concepts/design_file.html#docs-design-file
Config/ Ini File format: https://genpipes.readthedocs.io/en/latest/get-started/concepts/config_ini_file.html#docs-config-ini-file

C3G website: https://www.computationalgenomics.ca/


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